Match your disease gene signature to drugs known to reverse it, or to drugs that produce a similar molecular effect.
Map your spatial architecture of a tissue, identifying distinct regions and how their cell types and pathways differ.
Identify the biomarkers in your data that indicate a specific biological state, process, or treatment response.
Order cells along developmental or regenerative trajectories, using pseudotime to trace how states emerge, diverge, and transition.
Uncover the mechanism behind your signature with topology-aware impact analysis: perturbed pathways and the upstream regulators driving them.
Infer how your cell populations signal to one another, identifying the ligand-receptor interactions in your dataset.