Infer how your cell populations signal to one another, identifying the ligand-receptor interactions in your dataset.
Match your disease gene signature to drugs known to reverse it, or to drugs that produce a similar molecular effect.
Map your spatial architecture of a tissue, identifying distinct regions and how their cell types and pathways differ.
Order cells along developmental or regenerative trajectories, using pseudotime to trace how states emerge, diverge, and transition.
Annotate single cells in your sample, automatically or manually (by cluster), to define which cell populations are present.
Uncover the mechanism behind your signature with topology-aware impact analysis: perturbed pathways and the upstream regulators driving them.