Infer how your cell populations signal to one another, identifying the ligand-receptor interactions in your dataset.
Uncover the mechanism behind your signature with topology-aware impact analysis: perturbed pathways and the upstream regulators driving them.
Map your spatial architecture of a tissue, identifying distinct regions and how their cell types and pathways differ.
Order cells along developmental or regenerative trajectories, using pseudotime to trace how states emerge, diverge, and transition.
Identify the biomarkers in your data that indicate a specific biological state, process, or treatment response.
Discover subgroups within your population from their molecular profiles to stratify samples and guide decisions.