Order cells along developmental or regenerative trajectories, using pseudotime to trace how states emerge, diverge, and transition.
Uncover the mechanism behind your signature with topology-aware impact analysis: perturbed pathways and the upstream regulators driving them.
Build interaction networks to identify hub genes, key drivers, upstream regulators, and predicted downstream effects.
Annotate single cells in your sample, automatically or manually (by cluster), to define which cell populations are present.
Map your spatial architecture of a tissue, identifying distinct regions and how their cell types and pathways differ.
Identify the biomarkers in your data that indicate a specific biological state, process, or treatment response.